PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV41738.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 808aa    MW: 90301.5 Da    PI: 6.3421
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV41738.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.4e-23115216199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +   +  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  KZV41738.1 115 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 209
                 99*****************************7444..44459************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  KZV41738.1 210 LLGIRRA 216
                 ****997 PP

2Auxin_resp118.65.1e-39241324183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaast+s F+v+YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dld +rWpnS+Wrs+k
  KZV41738.1 241 AAHAASTNSCFTVFYNPRASPSEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDAIRWPNSHWRSVK 324
                 79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-4999244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-41108230IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-21114215No hitNo description
PfamPF023622.2E-21115216IPR003340B3 DNA binding domain
SMARTSM010191.1E-23115217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308115217IPR003340B3 DNA binding domain
PfamPF065071.5E-34241324IPR010525Auxin response factor
SuperFamilySSF542778.5E-7700781No hitNo description
PfamPF023093.4E-8703794IPR033389AUX/IAA domain
PROSITE profilePS5174523.737707791IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MEGEKKCLNS ELWHACAGPL VSLPMVGSRV VYFPQGHSEQ VAATTNKEID AHIPNYPSLP  60
PQLICQLHNV TMHVDVETDE VYAQMTLQPL TPQEQKDTYL PVELGTPSRQ PTNYFCKTLT  120
ASDTSTHGGF SVPRRAAEKV FPPLDFSQTP PAQELIARDL HDVEWKFRHI FRGQPKRHLL  180
TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA  240
AAHAASTNSC FTVFYNPRAS PSEFVIPLSK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY  300
MGTITGIGDL DAIRWPNSHW RSVKVGWDES TAGDRQPRVS LWEIEPLTTF PMYPSLFPLR  360
LKRPWYPGAS SFQDSLAQIG NNEAINGMTW LRGEAGEQGF GSINFQSIGM FPWMQQRFDP  420
SASRNDLSHQ YQAMLASGLQ NFGGGDMLKH QMMQFQQPVH YLQHPGAHNP LSQQQQVVDL  480
SVSSSHMLSA QSQTLSDNMP RPLLQLVDNH SEEHLQQHTY QESFSIQHDQ LQQRQPSDVP  540
SPSFTKPSFS NPISNFSAPM AHSSMQNMLG SLCTEGTGDL LNFTRTDQQI LIEQSPQQSW  600
VAKFSQSPVG GRSNSASLPP YRGKEASGEH ETCNLDAQNH DLFGTNMDSS SLLLPTMVSG  660
IGTSSVHTDM SSMPLGGSGY QNHLYGYVQE SDVLHNAGHI SQPTQASTFV KVYKTGSVGR  720
SLDIAQFNSY QELRQELGQM FRIPGLLEDP QRSGWQLVFV DREDDVLLLG DDPWDAFVNN  780
VWYIKILSPE DMQKLGKQDP ESLSTNAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-157434547388Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097995.10.0PREDICTED: auxin response factor 8-like isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A068U2C00.0A0A068U2C0_COFCA; Auxin response factor
STRINGSolyc02g037530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38572339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8